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INRA
24, chemin de Borde Rouge –Auzeville – CS52627
31326 Castanet Tolosan CEDEX - France

Dernière mise à jour : Mai 2018

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PHILIPPOT Laurent

PHILIPPOT Laurent
Director of Research
Department : ECOLDUR
Team : EMFI
Email : Laurent.philippot@dijon.inra.fr
Phone number : 03.80.69.33.46
Fax : 03.80.69.32.24

Curriculum Vitae

Education and positions held 

Since 2013 : Vice head of the Agroecology Department, INRA, Dijon

2008-09 : Visiting Scientist, Swedish University of Agricultural Science, Uppsala

2007 : Director of Research, INRA, Dijon

2000-01 : Visiting Scientist. Georgia Institute of Technology, School of Biology, Atlanta, Georgia, USA

1997-2007 : Research Scientist, Laboratory of Soil and Environmental Microbiology, INRA, Dijon1994-97 : Ph.D. in Microbial Ecology at the University Claude Bernard of Lyon, France

Selected National and international assignments 

2011 : National Delegate COST action 1103 (EU):  “Microbial ecology & the earth system: collaborating for insight and success with the new generation of sequencing tools”,

2002-10 : Member of the INRA CSS

2002-06 : National Delegate COST action 856 (EU) "Denitrificationin agriculture, air and water pollution" and chairperson for the working group on Ecology of denitrication

2002-06 : Elected member of the Scientific Commitee of the INRA division Agriculture and environment

  • Editorial board member of ISME J, FEMS Microbial Ecology, Applied Environmental Microbiology and Frontiers in Microbiology
  • Reviewer for the National Science Foundation (NSF), National Environmental Research Council (NERC), Austrian Science Fund (FWF), Science Foundation Ireland (SFI), Biotechnology and Biological Sciences Research Council (BBSRC), German Research Foundation (DFG), Natural Science research Council Canada Foundation (NESRC), Research Foundation Flanders (FWO), Netherlands Organisation for Scientific Research (NWO), Agence National Recherche (ANR), Chinese Academy of Science (CAS), research Foundation Flanders (FWP),..

Activités de Recherche

The research theme of my group is to understand the ecology of soil microbial communities, especially those involved in nitrogen cycling. We mostly focus on denitrification, which is a microbial respiratory process consisting in the reduction of soluble nitrogen forms, nitrate and nitrite, into gas, nitric oxide, nitrous oxide and dinitrogen when oxygen is limited. Denitrification is the main biological process responsible for the return of fixed nitrogen to the atmosphere, thus completing the N-cycle. It is also responsible together with nitrification for the loss of nitrogen, an essential plant nutrient and for the emission of N2O, an important greenhouse gas.

We are currently using N-cycling as model traits for bridging microbial community ecology, microbial processes and ecosystem functioning. For this purpose, both temporal and spatial patterns of microbial community activity, diversity and abundance are investigated.

Selected research fundings :

  • European Union, FP7 Framework, Marie Curie Initial Training Network :NORA- Nitrous oxide research alliance training network (2013-2016); http://nora.umb.no/
  • European Union, FP7 Framework, Large scale integrated project: EcoFINDERS- Ecological Function and Biodiversity Indicators in European Soils (2011-2014); http://ecofinders.dmu.dk/
  • European Union, FP7 Framework, Large scale integrated project:METAEXPLORE - metagenomics for bioexploration – tools and application (2010-2014);http://www.rug.nl/research/metaexplore/

Activités d'enseignement

Publication

  1. Philippot L., Spor A., Henault C., Bru D., Bizouard F., Jones C.M.  Sarr A. Maron P-A. 2013. ISME J. Loss in microbial diversity affects nitrogen-cycling in soil. Onlinefirst
  2. LE ROUX X., SCHMID B.,  POLY F., BARNARD R.L., NIKLAUS P.A., GUILLAUMAUD N., HABEKOST M., OELMANN Y.,PHILIPPOT L. SALLES J., SCHLOTER M.,  STEINBEISS S. WEIGELT A. 2013. Soil environmental conditions and microbial build-1 up mediate the effect of plant diversity on soil nitrifying and denitrifying enzyme activities in temperate grasslands. PLosOne. In press
  3. WIEDER W.R., CLEVELAND C.C., TAYLOR P.G., NEMERGUT D.R., HINCKLEY E-L.,PHILIPPOT L., BRU D., WEINTRAUB S.R., MARTIN M., TOWNSEND. A.R. 2013. Both increases and decreases in organic matter inputs reduce nitrate production and loss in a lowland tropical forest. Biogeochemistry. Accepted.
  4. GRIFFITHS B.S.,PHILIPPOT L. 2013. Insights into the resilience and resistence of soil microbial communities. FEMS Microb Rev. 37:  112-29
  5. JONES C.M., GRAF D, BRU D.,PHILIPPOT L., HALLIN S. 2013. The unaccounted yet abundant nitrous oxide reducing microbial community - a potential nitrous oxide sink. The ISME J. J 7: 417-426
  6.  CORREA-GALEOTE D., MARCO D.E., TORTOSA G., BRU D.,PHILIPPOT L., BEDMAR E.J. 2013. Spatial distribution of N-cycling microbial communities showed complex patterns in constructed wetland sediments. FEMS Microb Ecol 83:340-351
  7. WELSH A.,PHILIPPOT L., STENSTRÖM J., HALLET S., ENWALL K., BRU D., HALLIN S. 2012. Microbial biodiversity affects soil functional operating range. PlosOne. 7(12): e51962.
  8. GOUX X., AMIAUD B., PIUTTI S.,PHILIPPOT L., BENIZRI E. Spatial distribution of the abundance and activity of the sulfate esters-hydrolyzing microbial community in a rape field. J. Soil Sediment. 12:1360-1370
  9.  HAFEEZ F., SPOR A., BREUIL M.C., SCHWARTZ C., MARTIN-LAURENT F.,PHILIPPOT L. 2012. Distribution of bacteria and nitrogen-cycling microbial communities along constructed Technosol depth-profiles. J. Hazardous Material. 231-88-97
  10.  GUPTA R., BRU D., SWARUP BISARIA V,PHILIPPOT L., SHARMA S. 2012. Responses of Cajanus cajan and rhizospheric N-cycling communities to Bioinoculants. Plant Soil. 358:143-154
  11.  PHILIPPOT L., RITZ K., PANDARD P., HALLIN S., MARTIN-LAURENT F. 2012. Standardisation of methods in soil microbiology: progress and challenges. FEMS Microb Ecol. 82: 1-10
  12.  HAFFEZ F., MARTIN-LAURENT F., BEGUET J., BRU D., CORTET J., SCHWARTZ C., MOREL J.L.,PHILIPPOT L. 2012. Taxonomic and functional characterization of microbial communities in constructed Technosols. J. Soils Sediments. In Press.
  13.  EL AZHARI N., LAINE S., ROUARD N.,PHILIPPOT L., MARTIN-LAURENT F. 2012. Long-term impact of 19 years’ organic fertilization on the structure, diversity and density of the protocatechuate-degrading bacterial community. Agro Eco Env. 158: 72-82
  14.  CLUZEAU D., CORTET J., VILLENAVE C., MARTIN-LAURENT F., GUERNION M.,PHILIPPOT L., PERNIN C., MATEILLE T., CHAUSSOD R., BELLIDO A., ROUGE L., ARROUAYS D., PERES G. 2012. Integration of biodiversity in soil quality monitoring: soil fauna and microbial baselines and indicators of land uses. Europ. J. Soil. Biol. 49: 63-79
  15.  PETRIĆ I., BRU, D., UDIKOVIĆ-KOLIĆ N., HRŠAK D.,PHILIPPOT L., MARTIN-LAURENT F. 2011. Evidence for shifts in the structure and abundance of the microbial community in a long-term PCB-contaminated soil under bioremediation. J. Hazardous Material. 195: 254– 260
  16.  REGAN K., KAMMANN C., HARTUNG K., LENHART K., MÜLLER C.,PHILIPPOT L., KANDELER E., MARHAN S. Influence of elevated atmospheric CO2 on abundance and function of nitrifiers and denitrifiers in a grassland ecosystem. 17: 3176–3186
  17.  PHILIPPOT L., HALLIN S. 2011. Towards food, feed and energy crops mitigating climate change. Trends in Plant Science. 16:476-480. Highlighted by the Swedish University of Agricultural Sciences (Notiser från SLU. 4-2011), Utslsäppsnåla grödor i sikte, ISSN:1104-0505.
  18.  KEIL D., MEYER A., BERNER D., POLL C., SCHÜTZENMEISTER A., PIEPHO H.P., VLASENKO A.,PHILIPPOT L., SCHLOTER M., KANDELER E., MARHAN S. 2011. Influence of land-use intensity on spatial distribution of N-cycling microorganisms in grassland soils. FEMS Microbiol. 77: 95-106.
  19.  WESSÉN E., SÖDERSTRÖM M., STENBERG M., BRU D., HELLMAN M., THOMSON F., KLEMEDTSON L.,PHILIPPOT L., HALLIN S. 2011. Spatial distribution of ammonia oxidizing bacteria and archaea across a 44-hectare farm related to ecosystem functioning. ISME J. 5: 1213-1225
  20.  MARHAN S.,PHILIPPOT L., BRU D., RUDOLPH S., FRANZARING J., HÖGY P., FANGMEIER A., KANDELER E. 2011. Abundance and activity of nitrate reducers are more affected by temporal variation and soil depth than by elevated atmospheric [CO2]. FEMS Microbiol. Ecol. 76:209-219.
  21.  ATTARD E., RECOUS S., CHABBI A., LABREUCHE J.,PHILIPPOT L., SCHMID B., LE ROUX X. 2011. Soil environmental conditions rather than denitrifier abundance and diversity drive potential denitrification after changes in land-use and tillage practices. Global Change Biol. 17:1975-1989
  22.  MOUGEL C., MARON P.,PHILIPPOT L., RANJARD L., LEMANCEAU P. 2011. Traduction de la métagenomique des agrosystemes en services écologiques. Biofutur. 30 :44-47
  23.  PETRIC I.,PHILIPPOT L., ABBATE C., BISPO A., CHESNOT T., HALLIN S. , LAVAL K., LEBEAU T., LEMANCEAU P., LEYVAL C, LINDSTRÖM K., PANDARD P., ROMERO E., SARR A, SCHLOTER M., SIMONET P., SMALLA K., WILKE B-M., MARTIN-LAURENT F. 2011. Inter-laboratory evaluation of the ISO standard 11063 “soil quality - method to directly extract DNA from soil samples”. J. Microbiol. Methods. 84: 454-460
  24.  BRU D, RAMETTE A, SABY NPA, DEQUIEDT S, RANJARD L, JOLIVET C, ARROUAYS D,PHILIPPOT L. 2011. Determinants of the distribution of nitrogen-cycling microbial communities at the landscape-scale. The ISME J. 5: 532-542
  25.  PHILIPPOT L., TSCHERKO D., BRU D., KANDELER E. 2011. Distribution of high bacterial taxa across the chronosequence of two alpine glacier forelands. Microb. Ecol. 61:303-312
  26.  PHILIPPOT L., ANDERT J., JONES C.M., BRU B., HALLIN S. 2011. Importance of denitrifiers lacking the genes encoding the nitrous oxide reductase for N2O emissions from soil. Global Change Biology. 17:1497-1504
  27.  CHÈNEBY D., BRU D., PASCAULT N., MARON P.A., RANJARD L.,PHILIPPOT L. 2010. Role of plant residues in determining temporal patterns of activity, size and structure of the nitrate reducers. Appl. Environ. Microbiol. 76: 7136-7143
  28.  WESSÉN E, HALLIN S,PHILIPPOT L. 2010. Differential responses of bacterial and archaeal groups at high taxonomical ranks to soil management. Soil Biol. Biochem. 42:1759-1765
  29.  STRES B.,PHILIPPOT L., FAGANELI J., TIEDJE J.M. 2010. Frequent freeze-thaw cycles yield diminished yet resistant and responsive communities in two temperate soils: a laboratory experiment. FEMS Microb Ecol. 74:323-335
  30.  PHILIPPOT L, ABBATE C., BISPO A., CHESNOT T., HALLIN S., LEMANCEAU P., LINDSTRÖM K., PANDARD P., ROMERO E., SCHLOTER M., SIMONET P., SMALLA K., WILKE B-M., MARTIN-LAURENT F. 2010. Soil microbial diversity: an ISO standard for soil DNA extraction. J. Soil Sediment. 10:1344-1345.
  31.  PHILIPPOT L., ANDERSSON S.G.E., BATTIN T.J., PROSSER J.I., SCHIMEL J.P., WHITMAN W.B., HALLIN S. 2010. The ecological coherence of high bacterial taxonomic ranks. Nature Rev. Microbiol. 8: 524-529
  32.  DJIGAL D., BAUDOIN E,PHILIPPOT L., BRAUMAN A., VILLENAVE C. 2010. Shifts in size, genetic structure and activity of the soil denitrifier community by nematode grazing. Eur J Soil Biol. 46: 112-118
  33.  PHILIPPOT L, TREVORS J.T. 2010. Irrelevant citations in scientific literature. Water Air Soil Pollution. 205: 91-92
  34.  ČUHEL J., ŠIMEK1 M., LAUGHLIN R.J., BRU D., CHÈNEBY D., WATSON C.J.,PHILIPPOT L. 2010. Insights into the effect of soil pH on N2O and N2 emissions, and denitrifier community size and activity. Appl. Environ. Microbiol.76: 1870-1878.
  35.  ROJAS-OROPEZA M., DENDOOVEN L., GARZA-AVENDAÑO L., SOUZA V.,PHILIPPOT L., CABIROL N. 2010. Effects of biosolids application on nitrogen dynamics and microbial structure in a saline–sodic soil of the former Lake Texcoco (Mexico). Bioresource Technology. 101: 2491-2498
  36.  PHILIPPOT L, BRU D., SABY NPA, ČUHEL J, ARROUAYS D, ŠIMEK M, HALLIN S. 2009. Spatial patterns of bacterial taxa in nature reflect the 16S rRNA bacterial tree branching patterns. 11: 3096-3104. Rated as “Must Read” by the Faculty of 1000 Biology
  37.  VOGEL T.M., HIRSCH P.R., SIMONET P., JANSSON J.K., TIEDJE J.M., VAN ELSAS J.D., NALIN R.,PHILIPPOT L., BAILEY M.J. 2009. To sequence or not to sequence the whole-soil metagenome? Reply fromVogel et al. Nature Reviews Microbiology: 7, DOI: 10.1038/NRMICRO2119-C3
  38.  BAUDOIN E,PHILIPPOT L, CHÈNEBY D, CHAPUIS-LARDY L, FROMIN N, BRU D, RABARY B, BRAUMAN A. 2009. Direct seeding mulch-based cropping increases both the activity and the abundance of denitrifier communities in a tropical soil. Soil Biol Biochem. 41: 1703-1709
  39.  PHILIPPOT L., HALLIN S., BÖRJESSON G., BAGGS E. M. 2009. Biochemical cycling in the rhizosphere having an impact on global change. Plant Soil. 321:61-81. Article invité par l’editeur
  40.  PHILIPPOT L, ČUHEL J. SABY N.P.A., CHENEBY A., CHROŇÁKOVÁ, BRU D., ARROUAYS D., MARTIN-LAURENT F., ŠIMEK M. 2009. Mapping field-scale spatial distribution patterns of size and activity of the denitrifier community. Environ. Microbiol. 11:1518-1526. Rated as “Recommanded” by the Faculty of 1000 Biology
  41.  CHENEBY D., BRAUMAN A., RABARY B.,PHILIPPOT L. 2009. Differential responses of nitrate reducer community size, activity and structure to tillage systems. Appl. Environ Microbiol.75:3180-3186
  42.  HALLIN S., JONES C., SCHLOTER M.,PHILIPPOT L. 2009. Relationship between N-cycling bacterial communities and ecosystem functioning in a 50 years old fertilization experiment. ISME J. 3: 597-605
  43.  VOGEL T.M., SIMONET P., JANSSON J.K., HIRSCH P.R., TIEDJE J.M., VAN ELSAS J.D., BAILEY M.J., NALIN R.,PHILIPPOT L. 2009. TerraGenome: An international consortium for the complete sequencing of a soil metagenome. Nature Reviews Microbiology. 7:252-252. Rated as “Recommanded” by the Faculty of 1000 Biology
  44.  DEMANÈCHE S.,PHILIPPOT L., DAVID M., VOGEL T.M., SIMONET P. 2009. Soil bacteria denitrification gene cluster characterization via a metagenomic approach. Appl. Environ. Microbiol. 75: 534-537
  45.  KANDELER E., BRUNE T., ENOWASHU  E, DOERR N., GUGGENBERGER G., LAMERSDORF N.,PHILIPPOT L. 2009. Response of total and nitrate dissimilating bacteria to reduced N deposition in a spruce forest soil profile. FEMS Microbiol Ecol. 67:444-454
  46.  PHILIPPOT L., CREGUT M., CHÈNEBY D., DEQUIET S., MARTIN-LAURENT F.,RANJARD L., LEMANCEAU P. 2008. Effect of primary stresses on resilience and resistance of the soil nitrate reducer community to a subsequent stress. FEMS Lett. 285(1):51-7
  47.  HENRY S., TEXIER S., HALLET S., BRU D., DAMBREVILLE C., CHÈNEBY D., BIZOUARD F., GERMON J.C.,PHILIPPOT L. 2008. Disentangling the rhizosphere effect on nitrate reducers and denitrifiers: insight into the role of root exudates. Environ. Microbiol. 10(11): 3082–3092
  48.  HAASE S.,PHILIPPOT L., NEUMANN G., MARHAN S., KANDELER E. 2008. Local response of bacterial densities and enzyme activities to elevated atmospheric CO2 and different N supply in the rhizosphere of Phaseolus vulgaris. Soil. Biol. Biochem. 40:1225-1234
  49.  BRU D., MARTIN-LAURENT F.,PHILIPPOT L. 2008. Quantification of detrimental effect of a single primer-template mismatch by quantitative PCR using the 16S rRNA as an example. Appl. Environ. Microbiol 74:1660-1663
  50.  BRU D., SARR A.,PHILIPPOT L. 2007. Relative abundance of the membrane bound and periplasmic nitrate reductase. Appl. Environ. Microbiol. 73: 5971-5974 (Rated “Recommended” by the Faculty of 1000 Biology)
  51. PHILIPPOT L., HALLIN S., SCHLOTER M. 2007. Ecology of denitrifiers in agricultural soil. Adv. Agro. 96: 135-190. Article invité par l’editeur
  52.  BENIZRI E., NGUYEN C. PIUTTI S., SLEZACK-DESCHAUMES S.,PHILIPPOT L. 2007. Addition of maize root mucilage to soil changed the structure of the bacterial community. Soil Biol. Biochem. 39: 1230-1233
  53.  PINAY G., BARBERA P., CARRERAS-PALOU A., FROMIN N., SONIE L., COUTEAUX M.M., ROY J.,PHILIPPOT L., LENSI R. 2007. Impact of atmospheric CO2 concentration and vegetation functional groups on soil microbial activities. Soil Biol. Biochem. 39: 33-42
  54.  PHILIPPOT L., KUFFNER M., CHENEBY D., DEPRET G., LAGUERRE G., MARTIN-LAURENT F. Structure and activity of the nitrate reducing community in transgenic maize fields. Plant Soil. 287: 177-186
  55.  LE ROUX X.,PHILIPPOT L., DEGRANGE V., POLY F, WERTZ S. 2006. Relations entre diversité et fonctionnement chez les communautés microbiennes. Biofutur 268 : 50-53
  56.  KANDELER E., DEIGLMAYR K., TSCHERKO D.,PHILIPPOT L. 2006. Quantification of functional genes narG, nirK and nosZ of denitrifying bacteria across a glacier foreland by real time PCR. Appl. Environ. Microbiol. 72:5957-5962
  57.  DEIGLMAYR K.,PHILIPPOT L., TSCHERKO D., KANDELER E. 2006. Microbial succession of nitrate-reducing bacteria in the rhizosphere of Poa alpina across a glacier foreland in the Central Alps. Environ. Microbiol. 8(9):1600-1612
  58.  DEIGLMAYR K.,PHILIPPOT L., KANDELER E. Functional stability of the nitrate-reducing community in grassland soils towards high nitrate supply. Soil Biol. Biochem. 38: 2980-2984
  59.  HENRY S., BRU D., STRES B., HALLET S.,PHILIPPOT L. 2006 Quantitative detection of the nosZ gene encoding the nitrous oxide reductase and comparison of the abundance of 16S rRNA, narG, nirK and nosZ genes in soils. Appl. Environ. Microbiol. 72:5181-5189
  60.  PATRA A.K., CLAYS-JOSSERAND A., DEGRANGE V., GRAYSTON S.J., GUILLAUMAUD N., LOISEAU P., LOUAULT F., MAHMOOD S., NAZARET S.,PHILIPPOT L., POLY F., PROSSER J.I., LE ROUX X. 2006. Unraveling the effects of grazing regime and plant species composition on the enzyme activity and genetic structure of total and functional bacterial communities in grassland soils. Environ. Microbiol. 8(6): 1005-1016
  61.  MARTIN-LAURENT F., BARRES B., WAGSCHAL I., PIUTTI S., DEVERS M., SOULAS G.,PHILIPPOT L. 2006. Molecular analysis of atrazine-degrading bacterial consortia isolated from unplanted and maize planted soils. Plant Soil. 282: 99-115
  62.  DAMBREVILLE C., HALLET S., NGUYEN C., MORVAN T., GERMON J.C.,PHILIPPOT L. 2006. Structure and activity of the denitrifying community in a maize-cropped field fertilized with composted pig manure or ammonium nitrate. FEMS Microbiol. Ecol. 56:119-131
  63.  PHILIPPOT L. 2006. Use of functional genes to quantify denitrifiers in the environment. Biochem. Soc. Trans. 34:101-103
  64.  ENWALL K,PHILIPPOT L., HALLIN S. 2005. Activity and composition of the denitrifying community respond differently to long-term fertilization. Appl. Environ. Microbiol. 71:8335-8343
  65.  LOPEZ-GUTIERREZ J.C.,PHILIPPOT L.,MARTIN-LAURENT F. 2005. Impact of maize mucilage on atrazine mineralization and atzC abundance. Pest. Manag. Sci.61(9):838-44
  66.  PHILIPPOT L., HALLIN S. 2005. Denitrifying bacteria: A model of functional community to find the missing link between diversity and activity. Current Opinion Microbiol. 8:1-6
  67.  PHILIPPOT L. 2005. Denitrification in pathogenic bacteria: for better or worst? Trends Microbiol. 13:191-192.
  68.  HÉRY M.,PHILIPPOT L., MÉRIAUX E., POLY F., LE ROUX X., NAVARRO E. 2005. Nickel mine spoils revegetation attempts: Effect of pioneer plants on two functional bacterial communities involved in the N cycle. Environ. Microbiol. 7:486-498
  69.  PATRA A.K., ABBADIE L., CLAYS-JOSSERAND A., DEGRANGE V., GRAYSTON S. J., LOISEAU P., LOUAULT F., MAHMOOD S., NAZARET S.,PHILIPPOT L., POLY F., PROSSER J.I., RICHAUME A., LE ROUX X. 2005. Grazers induce strong changes in the enzyme activity, size and composition of microbial functional groups involved in soil N dynamics. Ecological Monographs. 75:65-80
  70.  PHILIPPOT L. 2005. Tracking nitrate reducers and denitrifiers in the environment. Biochem. Soc. Trans. 33: 200-204
  71.  ROUSSEL-DELIF L., TARNAWSKI S., HAMELIN J.,PHILIPPOT L., ARAGNO M., FROMIN N. 2005. Diversity of nitrate reductases in cultured rhizospheric Pseudomonas of perennial grasses grown under elevated atmospheric CO2 content. Microbiol. Ecol. 49:63-72
  72.  MOUNIER E., HALLET S., CHÈNEBY D., BENIZRI E., GRUET Y., NGUYEN C., PIUTTI S., ROBIN C, SLEZACK-DESCHAUMES S., MARTIN-LAURENT F., GERMON J.C.,PHILIPPOT L. 2004. Influence of maize mucilage on the structure and activity of the denitrifying community. Environ. Microbiol. 6: 301-312
  73.  MARTIN-LAURENT F., CORNET L., RANJARD L., LOPEZ-GUTIERREZ J.C.,PHILIPPOT L, SCHWARTZ C., CHAUSSOD R., CATROUX G., SOULAS G. 2004. Evidence for missing links between soil microbial communities global structure, atrazine-degrading genetic potential and measured atrazine-degrading activity in three French agricultural soils. FEMS Microbiol. Ecol. 48: 425-435
  74.  LÓPEZ-GUTIÉRREZ J.C., HENRY S., HALLET S., MARTIN-LAURENT F., CATROUX G,PHILIPPOT L. 2004. Quantification of a novel group of nitrate-reducing bacteria in the environment by real-time PCR. J. Microbiol. Methods. 57(3): 399-407
  75.  CHÈNEBY D., PERREZ S., DEVROE C., HALLET S., COUTON Y., BIZOUARD F., IURETIG G., GERMON J.C.,PHILIPPOT L. 2004. Denitrifiers in bulk and maize rhizospheric soil: diversity and N2O reducing abilities. Can. J. 49:469-474
  76.  DEIGLMAYR K.,PHILIPPOT L., HARTWIG U. A., KANDELER E. 2004. Structure and activity of the nitrate-reducing community in the rhizosphere of Lolium perenne and Trifolium repens under elevated atmospheric pCO2. FEMS Microbial. Ecol. 49:445-454
  77.  HENRY S., BAUDOUIN E., LOPEZ-GUTIERREZ J.C., MARTIN-LAURENT F., BRAUMAN A.,PHILIPPOT L. 2004. Quantification of denitrifying bacteria in soils by nirK gene targeted real-time PCR. J. Microbiol. Methods. 59: 327-335. Corrigendum 2005.
  78.  MARTIN-LAURENT F., PIUTTI S., HALLET S., WAGSCHALL I.,PHILIPPOT L., CATROUX G., SOULAS G. 2003. Monitoring of atrazine treatment on soil bacterial, fungal and atrazine-degrading communities by quantitative competitive PCR. Pest Manag Sci. 59(3):259-68.
  79.  DELORME S.,PHILIPPOT L., EDEL-HERMANN V., DEULVOT C., MOUGEL C., LEMANCEAU P. 2003. Comparative genetic diversity of the narG, nosZ, and 16S rRNA genes in fluorescent Pseudomonads. Appl. Environ. Microbiol. 69(2):1004-12.
  80.  CHÈNEBY D., HALLET S., MONDON M., MARTIN-LAURENT F., GERMON J.C.,PHILIPPOT L. 2003. Genetic characterization of the nitrate reducing community based on narG nucleotide sequence analysis. Microbial Ecol. 46:113-121
  81.  GERMON J.C., HÉNAULT C., CELLIER P., CHÈNEBY D., DUVAL O., GABRIELLE B., LAVILLE P., NICOULLAUD B.,PHILIPPOT L. 2003. Les émissions de protoxyde d'azote (N2O) d'origine agricole : évaluation au niveau du territoire français. Etude Gestion Sols 10: 315-328
  82.  GHIGLIONE J.F., RICHAUME A.,PHILIPPOT L., LENSI R. 2002. Relative involvement of nitrate and nitrite reduction in the competitiveness of Pseudomonas fluorescens in the rhizosphere of maize under non-limiting nitrate conditions. FEMS Microbiol. Ecol. 39: 121-127
  83.  PIUTTI S., HALLET S., ROUSSEAUX S.,PHILIPPOT L., SOULAS G, MARTIN-LAURENT F. 2002. Accelerated mineralisation of atrazine in maize rhizosphere soil. Biol. Fertil. Soils, 36:434-441
  84.  PHILIPPOT L. 2002. Denitrifying genes in Bacterial and Archaeal genomes. Biochem. Biophys. Acta.. 27;1577(3):355-76 5
  85.  PHILIPPOT L., PIUTTI S., MARTIN-LAURENT F., HALLET S., GERMON J.C. 2002. Molecular analysis of the nitrate-reducing community from unplanted and maize planted soil. Appl. Environ. Microbiol. 68(12):6121-6128.
  86.  PHILIPPOT L., MIRLEAU P., MAZURIER S.,SIBLOT S., HARTMANN A., LEMANCEAU P., J.C. GERMON. 2001. Characterization and transcriptional analysis of Pseudomonas fluorescens denitrifying clusters containing the nar, nir, nor and nos genes. Biochem. Biophys. Acta. 517(3):436-40.
  87.  MIRLEAU P,PHILIPPOT L, CORBERAND T, LEMANCEAU P. 2001. Involvement of nitrate reductase and pyoverdine in competitiveness of Pseudomonas fluorescens strain C7R12 in soil. Appl. Environ. Microbiol. 67(6):2627-35
  88.  MARTIN-LAURENT F.,PHILIPPOT L., HALLET S., CHAUSSOD R., GERMON J.C., SOULAS G., CATROUX. G. 2001. DNA extraction from soils : old bias for new microbial diversity analysis methods. Appl. Environ. Microbiol. 67: 2354-2359
  89.  MIRLEAU P., DELORME S.,PHILIPPOT L., MEYER J.M., MAZURIER S., LEMANCEAU P. 2000. Fitness in soil and rhizosphere of Pseudomonas fluorescens C7R12 compared with a C7R12 mutant affected in pyoverdine synthesis and uptake. FEMS. Microbiol. Ecol. 30: 163-170
  90.  GHIGLIONE J.F., GOURBIERE F., POTIER P.,PHILIPPOT L., LENSI R. 2000. Role of respiratory nitrate reductase in ability of Pseudomonas fluorescens YT101 to colonize the rhizosphere of maize. Appl. Environ. Microbiol. 66: 4012-4016
  91. CHENEBY D.,PHILIPPOT L., HARTMANN A., HENAULT C., GERMON J.C. 2000. Structure of denitrifying community isolated from three agricultural soils. FEMS Microbiol. Ecol.34(2):121-128
  92. PHILIPPOT L., HØJBERG O. 1999. Dissimilatory nitrate reductases in bacteria. Biochim. Biophys. Acta. 1444: 1-23
  93. GHIGLIONE J.F.,PHILIPPOT L., NORMAND P., LENSI R., POTIER P. 1999. Disruption of narG, the gene encoding the catalytic subunit of the dissimilative nitrate reductase A, affects nitrite respiration in Pseudomonas fluorescens YT101. J. Bacteriol. 181 : 5099-5102.
  94. LATOUR X.,PHILIPPOT L., CORBEAND T., LEMANCEAU P. 1999. The establishment of an introduced community is affected by the soil type. FEMS Microbiol. Ecol. 30 : 163-170
  95. CLAYS-JOSSERAND A., GHIGLIONE J.F.,PHILIPPOT L., LEMANCEAU P., LENSI R. 1999. Effect of soil type and plant species on the fluorescent Pseudomonads nitrate dissimilating community. Plant and Soil. 209: 275-282.
  96. PHILIPPOT L., CLAYS-JOSSERAND A., LENSI R., TRINSOUTROT I., POTIER P. 1997. Purification of the dissimilative nitrate reductase of Pseudomonas fluorescens and the cloning and sequencing of its corresponding genes. Biochim. Biophys. Acta 1350: 272-276.
  97. PHILIPPOT L., RENAULT P., SIERRA J. HENAULT C., CLAYS-JOSSERAND A., CHENU C., CHAUSSOD R., LENSI R. 1996. Dissimilatory nitrite-reductase provides a competitive advantage to Pseudomonas sp. RTC01 to colonise the centre of soil aggregates. FEMS Microbiol. Ecol. 21: 175-185.
  98. CLAYS-JOSSERAND A., LEMANCEAU P.,PHILIPPOT L., LENSI R. 1995. Influence of two plant species (flax and tomato) on the distribution of nitrogen dissimilative abilities within fluorescent Pseudomonas sp. Appl. Environ. Microbiol. 61: 1745-1749.
  99. PHILIPPOT L., CLAYS-JOSSERAND A., LENSI R. 1995. Use of Tn5 mutants to assess the role of the dissimilatory nitrite reductase in the competitive abilities of two Pseudomonas strains in soil. Appl. Environ. Microbiol. 61: 1426-1430.

Invited research presentations :

  1. ISME 14, Copenhagen, Danmark, 19-24 August 2012, “Use of funtional traits to study microbial diversity”
  2. Rhizosphere 3 International Conference, Perth, Australia, 25-30 September 2011, “Microbial community ecology and biochemical cycling in the rhizosphere”
  3. Annual Conference of the Canadian Society of Microbiologists, St John’s Newfoundland, Canada, June 20-23 2011, “Promenade among terrestrial denitrifiers: from genetics to ecology”
  4. Ecology of soil microorganisms conference, Prague, Czech Republic, 27th April-1st May 2011, “Bridging microbial community ecology and nitrogen cycling in soil”
  5. Biosystematics (7th International Congress of Systematic and Evolutionary Biology, 12th Annual Meeting of the Society of Biological Systematics (GfBS), and 20th International Symposium “Biodiversity and Evolutionary Biology”), Berlin, Germany, February 21-27 2011, “Use of functional traits to study microbial spatial patterns”.
  6. American Geophysical Union symposium, San Francisco, USA, December 13-17 2010, “Mapping spatial patterns of denitrifiers at large scale”
  7. Franco-Chinese Worshop on Environmental Bioremediation and Pollution Control and Evaluation, Guangzhou, China, 25-29 October 2010, ”Evaluation of the impact of agricultural practices on microbial diversity and soil functions”
  8. 9èmes Rencontres Plantes-Bactéries, Aussois, 19-22 Janvier 2010, “Fonctionnement des cycles biogeochimiques et communautés microbiennes rhizosphériques: quels enjeux?”
  9. Society for General Microbiology (SGM), Herriot-Watt University, Edinburgh, UK, 7-10 September 2009, “Molecular ecology of denitrifiers”
  10. Terragenome Workshop, Uppsala, Sweden, June 13-14 2009, “Scale, spatial pattern and Metagenomic”
  11. 11th Nitrogen Cycle, 15-17 September 2005, Grenade, Spain, “Molecular approaches to quantify denitrifiers in the environment”
  12. 10th Nitrogen Cycle, 02-04 September 2004, University of East Anglia, Norwich UK, “Tracking nitrate reducers and denitrifiers in the environment”

Liens

http://www.researcherid.com/rid/G-5598-2011

Mots clés

Microbial community ecology, nitrogen cycling, greenhouse gas emissions, denitrification, nitrification