01-2017 / on-going: Senior Scientist, INRAE Dijon, FR
02-2015 / 12-2016 ; Senior Scientist, Biology, University of Fribourg, Fribourg, CH
02-2009 / 01-2015 ; Senior Scientist, Botanical Institute, University of Basel, Basel, CH
01-2007 / 01-2009; Post-doc, Tree Microbe Interactions, INRA Nancy, Champenoux, FR
10-2003 / 12-2006 PhD, Tree Microbe Interactions, INRA Nancy, Champenoux, FR
09-2002 / 09-2003 ; MSc, Tree Microbe Interactions, INRA Nancy, Champenoux, FR

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I am molecular physiologist, mainly working in nutrient exchanges at the biotrophic interface (e.g. sugar, nitrogen, phosphorus) between plants and arbuscular mycorrhizal (AM) fungi. I am mainly working with grapevine, poplar, sorghum, wheat, pea and petunia as model plants and using Rhizophagus irregularis as AM fungal model. Functional characterization of plant and fungal transporters is one of my skills. Interestingly, AM fungi can link neighboring plants, forming common mycorrhizal networks (CMN). So, we are interested in deciphering terms of trade in such CMNs between plants and their shared fungal partners: we study fluxes of nutrients and the regulation of fungal and plant transcript-/prote-ome in different plant-plant interactions through an AM fungus. Finally, in the field, we are also working at the holobiont scale, for integrating the plant and associated microbes, both for functional and taxonomical studies. In this context, we studied the effect of agricultural practices (.e. agroforestry, conventional, organic) on AM fungi.

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Plant Microbe Interactions, Plant Physiology, Plant Development

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Mycorrhiza; Common Mycelial Network; Farming practices; Holobiont; Transporters; Transcript-/Gen-omics

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Research articles

• (66) Bettenfeld, P., Fontaine, F., Trouvelot, S., Fernandez, O., Courty, P.-E. (2020). Woody plant declines. What's wrong with the microbiome? – Trends in Plant Science 25, 381–394. DOI : 10.1016/j.tplants.2019.12.024.
• (65) Van tuinen, D., Tranchand, E., Hirissou, F., Wipf, D., P.‐E. (2020). Carbon partitioning in a walnut-maize agroforestry system through arbuscular mycorrhizal fungi. Rhizosphere 15, 100230. DOI : 10.1016/j.rhisph.2020.100230
• (64)Schneider-Manoury, L., Deveau, A., Moreno, M., Todedsco, F., Belmondo, S., Murat, C., Courty, P.E., Jakalski, M., Selosse, M.A. (2020). Two ectomycorrhizal truffles, Tuber melanosporum and T. aestivum, endophytically colonise roots of non-ectomycorrhizal plants in natural environments. New Phytologist 225, 2542-2556. . DOI : 10.1111/nph.16321
• (63) Symanczik, S., Krutzmann, J., Nehls, U., Boller, T., Wiemken, A., Boller, T., Courty, P.-E. (2020). Expression of major intrinsic protein genes in Sorghum bicolor roots under water deficit depends on arbuscular mycorrhizal fungal species. Soil Biology and Biochemistry 140, 107643.1 . DOI : 10.1016/j.soilbio.2019.107643
• (62) Calabrese, S., Cusant, L., Sarazin, A., Niehl, A., Erban, A., Brulé, D., Recorbet, G., Wipf, D., Roux, C., Kopka, J., Boller, T., Courty, P.-E. (2019). Imbalanced Regulation of Fungal Nutrient Transports According to Phosphate Availability in a Symbiocosm Formed by Poplar, Sorghum, and Rhizophagus irregularis. Frontiers in Plant Science, 10. DOI : 10.3389/fpls.2019.01617 .
• (61) Uroz, S., Courty, P.-E., Oger, P. (2019). Plant symbionts are engineers of the plant-associated microbiome. Trends in Plant Science 24, 905-916. DOI : 10.1016/j.tplants.2019.06.008.
• (60) Liu, G., Stirnemann, M., , Gübeli, C., Egloff, S., Courty, P.-E., Aubry, S., Vandenbussche, M., Morel, P., Reinhardt, D., Martinoia, E., Borghi, L. (2019). Strigolactones Play an Important Role in Shaping Exodermal Morphology via a KAI2-Dependent Pathway. iScience, 17, 144-154. DOI : 10.1016/j.isci.2019.06.024.
• (59) Wipf, D., Krajinski, F., Van Tuinen, D., Recorbet, G., Courty, P.-E. (2019). Trading on the arbuscular mycorrhiza market: from arbuscules to common mycorrhizal networks. New Phytologist, 223 (3), 1127-1142. DOI : 10.1111/nph.15775.
• (58) Courty, P. E., Buee, M., Tech, J. J. T., Brulé, D., Colin, Y., Leveau, JHJ., Uroz, S. (2018). Impact of soil pedogenesis on the diversity and composition of fungal communities across the California soil chronosequence of Mendocino. Mycorrhiza, 28 (4), 343-356. DOI : 10.1007/s00572-018-0829.
• (57) Drechsler, N., Courty, P.-E., Brulé, D., Kunze, R. (2018). Identification of arbuscular mycorrhiza-inducible Nitrate Transporter 1/Peptide Transporter Family (NPF) genes in rice. Mycorrhiza, 28 (1), 93-100. DOI : 10.1007/s00572-017-0802-z.
• (56) Lallemand , F., Robionek, A., Courty, P.-E., Selosse, M.-A. (2018). The C-13 content of the orchid Epipactis palustris (L.) Crantz responds to light as in autotrophic plants. Botany Letters, 165 (2), 265-273. DOI : 10.1080/23818107.2017.1418430.
• (55) Symanczik, S., Lehmann, M. F., Wiemken, A., Boller, T., Courty, P.-E. (2018). Effects of two contrasted arbuscular mycorrhizal fungal isolates on nutrient uptake by Sorghum bicolor under drought. Mycorrhiza, 28 (8), 779-785.
• (54) Calabrese, S., Kohler, A., Niehl, Veneault-Fourrey, C., Boller, Courty, P.-E. (2017). Transcriptome analysis of the Populus trichocarpa–Rhizophagus irregularis Mycorrhizal Symbiosis. Regulation of Plant and Fungal Transportomes under Nitrogen Starvation. Plant and Cell Physiology, 58 (6), 1003-1017. DOI : 10.1093/pcp/pcx044.
• (53) Jacquemyn, H., Waud, M., Brys, R., Lallemand , F., Courty, P.-E., Robionek, A., Selosse, M. A. (2017). Mycorrhizal associations and trophic modes in coexisting orchids: an ecological continuum between auto- and mixotrophy. Frontiers in Plant Science, 8. DOI : 10.3389/fpls.2017.01497.
• (52) Koegel, S., Mieulet, D., Baday, S., Chatagnier, O., Lehmann, M., Wiemken, A., Boller, T., Wipf, D., Berneche, S., Guiderdoni, E., Courty, P.-E. (2017). Phylogenetic, structural, and functional characterization of AMT3;1, an ammonium transporter induced by mycorrhization among model grasses. Mycorrhiza, 27 (7), 695-708. DOI : 10.1007/s00572-017-0786-8.
• (51) Lallemand, F., Püttsepp, Ü., Lang, M., Luud, A., Courty, P.-E., Palancade, C., Selosse, M. A. (2017). Mixotrophy in Pyroleae (Ericaceae) from Estonian boreal forests does not vary with light or tissue age. Annals of Botany, 120 (3), 361-371. DOI : 10.1093/aob/mcx054.
• (50) Prinzing, A., Ozinga, W. A., Brändle, M., Courty, P.-E., Hennion, F., Labandeira, C., Parisod, J., Pihain, M., Bartish, I. (2017). Benefits from living together ? Clades whose species use similar habitats may persist as a result of eco-evolutionary feedbacks. New Phytologist, 213 (1), 66-82. DOI : 10.1111/nph.14341.
• (49) Rich, M. K., Nouri, E., Courty, P.-E., Reinhardt, D. (2017). Diet of Arbuscular Mycorrhizal Fungi : Bread and Butter ?. Trends in Plant Science, 22 (8), 652-660. DOI : 10.1016/j.tplants.2017.05.008.
• (48) Rich, M. K., Courty, P.-E., Roux, C., Reinhardt, D. (2017). Role of the GRAS transcription factor ATA/RAM1 in the transcriptional reprogramming of arbuscular mycorrhiza in Petunia hybrida. BMC Genomics, 18. DOI : 10.1186/s12864-017-3988-8.
• (47) Ait Lahmidi, N., Courty, P.-E., Brulé, D., Chatagnier, O., Arnould, C., Doidy, J., Berta, G., Lingua, G., Wipf, D., Bonneau, L. (2016). Sugar exchanges in arbuscular mycorrhiza: RiMST5 and RiMST6, two novel Rhizophagus irregularis monosaccharide transporters, are involved in both sugar uptake from the soil and from the plant partner. Plant Physiology and Biochemistry, 107, 354-363. DOI : 10.1016/j.plaphy.2016.06.023.
• (46) Calabrese, S., Pérez-Tienda, J., Ellerbeck, M., Arnould, C., Chatagnier, O., Boller, T., Schüßler, A., Brachmann, A., Wipf, D., Ferrol, N., Courty, P.-E. (2016). GintAMT3 – a low-affinity ammonium transporter of the arbuscular mycorrhizal Rhizophagus irregularis. Frontiers in Plant Science, 7, art 679. DOI : 10.3389/fpls.2016.00679.
• (45) Courty, P.-E., Munoz, F., Selosse, M.-A., Duchemin, M., Criquet, S., Ziarelli, F., Buée, M., Plassard, C., Taudière, A., Garbaye, J., Richard, F. (2016). Into the functional ecology of ectomycorrhizal communities: environmental filtering of enzymatic activities. Journal of Ecology, 104 (6), 1585-1598 . DOI : 10.1111/1365-2745.12633.
• (44) Garcia, K., Doidy, J., Zimmermann, S., Wipf, D., Courty, P.-E. (2016). Take a Trip Through the Plant and Fungal Transportome of Mycorrhiza. Trends in Plant Science, 21 (11), 937-950. DOI : 10.1016/j.tplants.2016.07.010.
• (43) Walder, F., Boller, T., Viemken, A., Courty, P.-E. (2016). Regulation of plants’ phosphate uptake in common mycorrhizal networks: role of intraradical fungal phosphate transporters. Plant Signaling and Behavior, 11 (2). DOI : 10.1080/15592324.2015.1131372.
• (42) Courty, P.-E., Wipf, D. (2016). Editorial : Transport in plant microbe interactions. The nutritional transportome in plant-microbe interactions, next stop please. Frontiers in Plant Science, 7, art 809. DOI : 10.3389/fpls.2016.00809.
• (41) Courty, P.-E., Smith, P., Koegel, S., Redecker, D., Wipf, D. (2015). Inorganic Nitrogen Uptake and Transport in Beneficial Plant Root-Microbe Interactions. Critical Reviews in Plant Sciences, 34 (1-3), 4 - 16. DOI : 10.1080/07352689.2014.897897.
• (40) Courty, P.-E., Doubkova, P., Calabrese, S., Niemann, H., Lehmann, M. F., Vosatka, M., Selosse, M. A. (2015). Species-dependent partitioning of C and N stable isotopes between arbuscular mycorrhizal fungi and their C3 and C4 hosts. Soil Biology and Biochemistry, 82, 52-61. DOI : 10.1016/j.soilbio.2014.12.005.
• (39) Derelle, D., Courty, P.-E., Dajoz, I., Declerck, S., van Aarle, I. M., Carmignac, D., Genet, P. (2015). Plant identity and density can influence arbuscular mycorrhizal fungi colonization, plant growth, and reproduction investment in coculture. Botany, 93 (7), 405-412. DOI : 10.1139/cjb-2014-0180.
• (38) Koegel, S., Brulé, D., Wiemken, A., Boller, T., Courty, P.-E. (2015). The effect of different nitrogen sources on the symbiotic interaction between Sorghum bicolor and Glomus intraradices : Expression of plant and fungal genes involved in nitrogen assimilation. Soil Biology and Biochemistry, 86, 159-163. DOI : 10.1016/j.soilbio.2015.03.003.
• (37) Symanczik, S., Courty, P.-E., Boller, T., Wiemken, A., Al-Yahya’ei, M. N. (2015). Impact of water regimes on an experimental community of four desert arbuscular mycorrhizal fungal (AMF) species, as affected by the introduction of a non-native AMF species. Mycorrhiza, 25 (8), 639-647. DOI : 10.1007/s00572-015-0638-3.
• (36) Walder, F., Brulé, D., Koegel, S., Wiemken, A., Boller, T., Courty, P.-E. (2015). Plant phosphorus acquisition in a common mycorrhizal network : regulation of phosphate transporter genes of the Pht1 family in sorghum and flax. New Phytologist, 205 (4), 1632–1645. DOI : 10.1111/nph.13292.
• (35) Derrien, D., Plain, C., Courty, P.-E., Gelhaye, L., Moerdijk-Poortvliet, T. C. W., Thomas, F., Versini, A., Zeller, B., Koutika, L.-S., Boschker, H. T. S., Epron, D. (2014). Does the addition of labile substrate destabilise old soil organic matter?. Soil Biology and Biochemistry, 76, 149 - 160. DOI : 10.1016/j.soilbio.2014.04.030.
• (34) Gallardo Guerrero, K., Courty, P.-E., Le Signor, C., Wipf, D., Vernoud, V. (2014). Sulfate transporters in the plant's response to drought and salinity: regulation and possible functions. Frontiers in Plant Science, 5. DOI : 10.3389/fpls.2014.00580.
• (33) Krajinski, F., Courty, P.-E., Sieh, D., Franken, P., Zhang, H., Bucher, M., Gerlach, N., Kryvoruchko, I., Zoeller, D., Udvardi, M., Hause, B. (2014). The H+-ATPase HA1 of Medicago truncatula Is Essential for Phosphate Transport and Plant Growth during Arbuscular Mycorrhizal Symbiosis. Plant Cell, 26, 1808-1817.
• (32) Yguel, B., Courty, P.-E., Jactel, H., Pan, X., Butenschoen, O., Murray, P. J., Prinzing, A. (2014). Mycorrhizae support oaks growing in a phylogenetically distant neighbourhood. Soil Biology and Biochemistry, 78, 204–212. DOI : 10.1016/j.soilbio.2014.08.003.
• (31) Bahram, M., Koljalg, U., Courty, P.-E., Diédhiou, A. G., Kjøller, R., Polme, S., Ryberg, M., Veldre, V., Tedersoo, L. (2013). The distance decay of similarity in communities of ectomycorrhizal fungi in different ecosystems and scales. Journal of Ecology, 101 (5), 1335-1344. DOI : 10.1111/1365-2745.12120. 
• (30) Casieri, L., Ait Lahmidi, N., Doidy, J., Veneault-Fourrey, C., Couturier-Migeon, A., Bonneau, L., Courty, P.-E., Garcia, K., Charbonnier, M., Delteil, A., Brun, A., Zimmermann, S., Plassard, C., Wipf, D. (2013). Biotrophic transportome in mutualistic plant-fungal interactions. Mycorrhiza, 23 (8), 597 - 625. DOI : 10.1007/s00572-013-0496-9.
• (29) Breda, N., Maillard, P., Montpied, P., Brechet, C., Garbaye, J., Courty, P.-E. (2013). Isotopic evidence in adult oak trees of a mixotrophic lifestyle during spring reactivation. Soil Biology and Biochemistry, 58, 136 - 139. DOI : 10.1016/j.soilbio.2012.11.002.
• (28) Cohen, D., Bogeat-Triboulot, M.-B., Vialet-Chabrand, S., Merret, R., Courty, P.-E., Moretti, S., Bizet, F., Guilliot, A., Hummel, I. (2013). Developmental and Environmental Regulation of Aquaporin Gene Expression across Populus Species: Divergence or Redundancy?. Plos One, 8 (2). DOI : 10.1371/journal.pone.0055506.
• (27) Koegel, S., Boller, T., Lehmann, M. F., Wiemken, A., Courty, P.-E. (2013). Rapid nitrogen transfer in the Sorghum bicolor-Glomus mosseae arbuscular mycorrhizal symbiosis. Plant Signaling and Behavior, 8 (8). DOI : 10.4161/psb.25229
• (26) Koegel, S., Ait Lahmidi, N., Arnould, C., Chatagnier, O., Walder, F., Ineichen, K., Boller, T., Wipf, D., Wiemken, A., Courty, P.-E. (2013). The family of ammonium transporters (AMT) in Sorghum bicolor: two AMT members are induced locally, but not systemically in roots colonized by arbuscular mycorrhizal fungi. New Phytologist, 198 (3), 853 - 865. DOI : 10.1111/nph.12199.
• (25) Uroz, S., Courty, P.-E., Pierrat, J.-C., Peter, M., Buee, M., Turpault, M.-P., Garbaye, J., Frey-Klett, P. (2013). Functional Profiling and Distribution of the Forest Soil Bacterial Communities Along the Soil Mycorrhizosphere Continuum. Microbial Ecology, 66 (2), 404 - 415. DOI : 10.1007/s00248-013-0199-y.
• (24) Walder, F., Niemann, H., Lehmann, M., Boller, T., Wiemken, A., Courty, P. E. (2013). Tracking the carbon source of arbuscular mycorrhizal fungi colonizing C3 and C4 plants using carbon isotope ratios 13C. Soil Biology and Biochemistry, 58, 341-344. DOI : 10.1016/j.soilbio.2012.12.008.
• (23) Yakovlev, I. A., Hietala, A. M., Courty, P.-E., Lundell, T., Solheim, H., Fossdal, C. G. (2013). Genes associated with lignin degradation in the polyphagous white-rot pathogen Heterobasidion irregulare show substrate-specific regulation. Fungal Genetics and Biology, 56, 17-24. DOI : 10.1016/j.fgb.2013.04.011.
• (22) Courty, P.-E., Walder, F., Boller, T., Ineichen, K., Wiemken, A., Rousteau, A., Selosse, M.-A. (2011). Carbon and nitrogen metabolism in mycorrhizal networks and mycoheterotrophic plants of tropical forests : a stable isotope analysis. Plant Physiology, 156 (2), 952-961. DOI : 10.1104/pp.111.177618.
• (21) Courty, P.-E., Labbe, J., Kohler, A., Marcais, B., Bastien, C., Churin, J.-L., Garbaye, J., Le tacon, F. (2011). Effect of poplar genotypes on mycorrhizal infection and secreted enzyme activities in mycorrhizal and non-mycorrhizal roots. Journal of Experimental Botany, 62 (1), 249-260.
• (20) Pritsch, K., Courty, P.-E., Churin, J.-L., Cloutier-Hurteau, B., Arif Ali, M., Damon, C., Duchemin, M., Egli, S., Ernst, J., Fraissinet-Tachet, L., Kuhar, F., Legname, E., Marmeisse, R., Müller, A., Nikolova, P., Peter, M., Plassard, C., Richard, F., Schloter, M., Selosse, M.-A., Franc, A., Garbaye, J. (2011). Optimized assay and storage conditions for enzyme activity profiling of ectomycorrhizae. Mycorrhiza, 21 (7), 589-600. DOI : 10.1007/s00572-011-0364-4.
• (19) Rineau, F., Courty, P.-E. (2011). Secreted enzymatic activities of ectomycorrhizal fungi as a case study of functional diversity and functional redundancy. Annals of Forest Science, 68 (1), 69-80. DOI : 10.1007/s13595-010-0008-4.
• (18) Pereda Campos, M. V., Orsini, E., Courty, P.-E., Lota, F., Kohler, A., Diss, L., Blaudez, D., Chalot, M., nehls, u., Bucher, M., Martin, F. (2011). Structure and expression profile of the phosphate Pht1 transporter gene family in Mycorrhizal Populus trichocarpa. Plant Physiology, 156 (4), 2141-2154. DOI : 10.1104/pp.111.180646.
• (17) Courty, P.-E., Franc, A., Garbaye, J. (2010). Temporal and functional pattern of secreted enzyme activities in an ectomycorrhizal community. Soil Biology and Biochemistry, 42 (11), 2022-2025. DOI : 10.1016/j.soilbio.2010.07.014.
• (16) Courty, P.-E., Buee, M., Diedhiou, A. G., Frey-Klett, P., Le Tacon, F., Rineau, F., Turpault, M.-P., Uroz, S., Garbaye, J. (2010). The role of ectomycorrhizal communities in forest ecosystem processes. New perspectives and emerging concepts. Soil Biology and Biochemistry, 42 (5), 679-698. DOI : 10.1016/j.soilbio.2009.12.006.
• (15) Courty, P.-E. (2010). Fungal diversity : a focus on ectomycorrhizal fungi in tropical forests. Journal of Tropical Forest Science, 22, 5-6.
• (14) Courty, P.-E., Hoegger, P.J., Kilaru, S., Kohler, A., Buee, M., Garbaye, J., Martin, F., Kües, U. (2009). Phylogenetic analysis, genomic organization, and expression analysis of multi-copper oxidases in the ectomycorrhizal basidiomycete Laccaria bicolor. New Phytologist, 182 (3), 736-750. DOI : 10.1111/j.1469-8137.2009.02774.x.
• (13) Cullings, K., Courty, P.-E. (2009). Saprotrophic capabilities as functional traits to study functional diversity and resilience of ectomycorrhizal community. Oecologia, 161 (4), 661-664. DOI : 10.1007/s00442-009-1434-6.
• (12) Courty, P.-E., Franc, A., Pierrat, J.-C., Garbaye, J. (2008). Temporal changes in the ectomycorrhizal community in two soil horizons of a temperate oak forest. Applied and Environmental Microbiology, 74 (18), 5792-5801. DOI : 10.1128/AEM.01592-08. 37730
• (11) Courty, P.-E., Poletto, M., Duchaussoy, F., Buee, M., Garbaye, J., Martin, F. (2008). Gene transcription in Lactarius quietus-Quercus petraea ectomycorrhizas from a forest soil. Applied and Environmental Microbiology, 74 (21), 6598-6605. DOI : 10.1128/AEM.00584-08.
• (10) Lekounougou, S., Mounguengui, S., Dumarçay, S., Rose, C., Courty, P.-E., Garbaye, J., Gérardin, P., Jacquot, J.-P., Gelhaye, É. (2008). Initial stages of Fagus sylvatica wood colonization by the white-rot basidiomycete Trametes versicolor: Enzymatic characterization. International Biodeterioration and Biodegradation, 61 (4), 287-293. DOI : 10.1016/j.ibiod.2007.06.013.
• (9) Martin, F., Aerts, A., Ahrén, D., Brun, A., Danchin, E., Duchaussoy, F., Gibon, J., Kohler, A., Lindquist, E., Pereda, V., Salamov, A., Shapiro, H. J., Wuyts, J., Blaudez, D., Buee, M., Brokstein, P., Canbäck, B., Cohen, D., Courty, P.-E., Coutinho, P. M., Delaruelle, C., Detter, J. C., Deveau, A., DiFazio, S., Duplessis, S., Fraissinet-Tachet, L., Lucic, E., Frey-Klett, P., Fourrey, C., Feussner, I., Gay, G., Grimwood, J., Hoegger, P.J., Jain, P., kilaru, S., Labbé, J., Lin, Y.C., Legué, V., Le tacon, F., Marmeisse, R., Melayah, D., Montanini, B., Muratet, M., Nehls, U., Niculita-Hirzel, H., Oudot-Le Secq, M.-P., Peter, M., Quesneville, H., Rajashekar, B., Reich, M., Rouhier, N., Schmutz, J., Yin, T., Chalot, M., Henrissat, B., Kües, U., Lucas, S., van de Peer, Y., Podila, G.K., Polle, A., Pukkila, P.J., Richardson, P.M., Rouzé, P., Sanders, I.R., Stajich, J.E., Tunlid, A., Tuskan, G., Grigoriev, I.V. (2008). The genome of Laccaria bicolor provides insights into mycorrhizal symbiosis. Nature, 452 (7183), 88-93. DOI : 10.1038/nature06556.
• (8) Rineau, F., Courty, P.-E., Uroz, S., Buee, M., Garbaye, J. (2008). Simple microplate assays to measure iron mobilization and oxalate secretion by ectomycorrhizal tree roots. Soil Biology and Biochemistry, 40 (9), 2460-2463. DOI : 10.1016/j.soilbio.2008.03.012.
• (7) Buée, M., Courty, P.-E., Mignot, D., Garbaye, J. (2007). Soil niche effect on species diversity and catabolic activities in an ectomycorrhizal fungal community. Soil Biology and Biochemistry, 39 (8), 1947-1955. DOI : 10.1016/j.soilbio.2007.02.016.
• (6) Courty, P.-E., Breda, N., Garbaye, J. (2007). Relation between oak tree phenology and the secretion of organic matter degrading enzymes by Lactarius quietus ectomycorrhizas before and during bud break. Soil Biology and Biochemistry, 39 (7), 1655-1663. DOI : 10.1016/j.soilbio.2007.01.017.
• (5) Koide, R. T., Courty, P.-E., Garbaye, J. (2007). Research perspectives on functional diversity in ectomycorrhizal fungi. New Phytologist, 174 (2), 240-243. DOI : 10.1111/j.1469-8137.2007.01987.x.
• (4) Courty, P.-E., Pritsch, K., Schloter, M., Hartmann, A., Garbaye, J. (2005). Activity profiling of ectomycorrhiza communities in two forest soils using multiple enzymatic tests. New Phytologist, 167, 309-319. 
• (3) Courty, P.-E., Pouysegur, R., Buee, M., Garbaye, J. (2005). Laccase and phosphatase activities of the dominant ectomycorrhizal types in a lowland oak forest. Soil Biology and Biochemistry, 38 (6), 1219-1222. DOI : 10.1016/j.soilbio.2005.10.005.
• (2) Duplessis, S., Courty, P.-E., Tagu, D., Martin, F. (2005). Transcript patterns associated with ectomycorrhiza development in Eucalyptus globulus and Pisolithus microcarpus. New Phytologist, 165, 599-611. 
• (1) Peter, M., Courty, P.-E., Kohler, A., Delaruelle, C., Martin, D., Tagu, D., Frey-Klett, P., Duplessis, S., Chalot, M., Podila, G., Martin, F. (2003). Analysis of expressed sequence tags from the ectomycorhizal basidiomycetes Laccaria bicolor and Pisolithus microcarpus. New Phytologist, 159 (1), 117-129.

Chapter books

• (6) Bonneau, L., Recorbet, G., Van Tuinen, D., Wipf, D., Courty, P.-E. (2019). Analysis of common mycorrhizal networks in microcosms. In: Reinhardt, D., Sharma, A.K. , Methods in rhizosphere biology research (p. 271-279). Springer. 279 p. DOI : 10.1007/978-981-13-5767-1_15.
• (5) Drain, A., Bonneau, L., Recorbet, G., Van Tuinen, D., Wipf, D., Courty, P.-E. (2019). Characterization of arbuscular mycorrhizal communities in roots of vineyard plants. In: Reinhardt, D., Sharma, A.K. , Methods in rhizosphere biology research (p. 27-34). Springer. 279 p. DOI : 10.1007/978-981-13-5767-1_3.
• (4) Courty, P.-E., Doidy, J., Garcia, K., Wipf, D., Zimmermann, S. (2017). The transportome of mycorrhizal systems. In: Martin, Francis, Molecular Mycorrhizal Symbiosis (p. 239-256). John Wiley & Sons, Inc. DOI : 010.1002/9781118951446.ch14.
• (3) Selosse, M.-A., Bocayuva, M., Megumi Kasuya, M. C., Courty, P.-E. (2016). Mixotrophy in mycorrhizal plants : extracting C from mycorrhizal networks. In: Francis Martin (editor), dir., Molecular Mycorrhizal Symbiosis (p. 576 p.). USA : Wiley-Blackwell. 576 p. DOI : 10.1002/9781118951446.ch25.
• (2) Jones, M. D., Brooks, D., Courty, P.-E., Garbaye, J., Grierson, P., Pritsch, K. (2011). Enzyme Activities of Root Tips and in situ Profiles of Soils and Rhizospheres. In: Richard P. Dick (ed), dir., Methods in Soil Enzymology (p. 275-309). Madison, USA : Soil Science Society of America. 275 p. DOI : 10.2136/sssabookser9.c13.
• (1) Montecchio, L., Rossi, S., Courty, P.-E., Garbaye, J. (2006). Descriptions of Ectomycorrhizae. In: Agerer R, Danielson RM, Egli S, Ingleby K, Luoma D, Treu R (eds), dir., Entoloma nitidum Quel. plus Carpinus betulus L (p. 31-36).

Research articles for a general and technical audience

• (5) Trouvelot, S., Mahé, H., Bettenfeld, P., van Schaik, E., Adrian, M., Dal, F., Fernandez, O., Fontaine, F., Grosjean, C., Larignon, P., Mouille, G., Martin-Laurent, F., Pabion, S., Zekri, O., Mondy, S., Wipf, D., Courty, P.-E. (2019). L’holobionte vigne, un levier biologique pour lutter contre les dépérissements ?. Revue des oenologues et des techniques vitivinicoles et oenologiques, 172, 23-26.
• (4) Courty, P.-E., Trouvelot, S., Mondy, S., Adrian, M., Bonneau, L., Martin, F., Van Tuinen, D., Wipf, D., Selosse, M. A. (2018). Le microbiote de la vigne : de nouveaux paradigmes et une perspective pour la vigne de demain. Revue des oenologues et des techniques vitivinicoles et oenologiques, 169S, 25-27.
• (3) Thomas, f., Hirissou, F., Aurelle, V., Wipf, D., Van Tuinen, D., Courty, P.-E., Casieri, L., Waligora, C. (2018). Champignons mycorhiziens et symbiose mycorhizienne, les as de la nutrition végétale. TCS Techniques Culturales Simplifiées, 98, 18-29.
• (2) Selosse, M.-A., Richard, F., Courty, P.-E. (2007). Plantes et champignons : l’alliance vitale. La Recherche (411), 58-61.
• (1) Buee, M., Courty, P.-E., Le Tacon, F., Garbaye, J. (2006). Écosystèmes forestiers : diversité et fonction des champignons. Biofutur (268), 42-45.

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Mycelium Network in Plant-Plant interactions (PUMPER, Burgundy Council, FR), The grapevine Holobiont (Holoviti, CNIV, FR)

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